Scientific name Common Name Abbr Phyla Version Source Reference
Amaranthus hypochondriacus Amaranth Ahy Eudicot v1 (ER) Phytozome11 The Plant Genome
Amborella trichopoda Amborella Atr Basal angiosperm v1 Phytozome11 Science
Ananas cosmosus Pineapple Aco Monocot v3 (ER) Phytozome11 Nature genetics
Arabidopsis lyrata Lyrate rockcress Aly Eudicot v1.0 Phytozome11 Nature genetics
Arabidopsis thaliana Thale cress Ath Eudicot TAIR10 Phytozome11 Nature
Brachypodium distachyon Purple false brome Bdi Monocot v2.1 Phytozome10 Nature
Capsella grandiflora Cgr Eudicot v1.1 Phytozome11 Nature genetics
Capsella rubella Red shepherd's purse Cru Eudicot v1.0 Phytozome11 Nature genetics
Carica papaya Papaya Cpa Eudicot ASGPBv0.4 Phytozome11 Nature
Chlamydomonas reinhardtii Cre Green algae v5.5 Phytozome11 Science
Citrus clementina Clementine Ccl Eudicot v1.0 Phytozome11 Nature biotechnology
Citrus sinensis Sweet orange Csi Eudicot v1.1 Phytozome11 Nature genetics
Coccomyxa subellipsoidea C-169 Csu Green algae v2.0 Phytozome11 Genome Biology
Cucumis sativus Cucumber Csa Eudicot v1.0 Phytozome11 Nature genetics
Eucalyptus grandis Eucalyptus Egr Eudicot v2.0 Phytozome11 Nature
Fragaria vesca Woodland strawberry Fve Eudicot v1.1 Phytozome11 Nature genetics
Glycine max Soybean Gma Eudicot Wm82.a2.v1 Phytozome11 Nature
Gossypium raimondii Cotton D Gra Eudicot v2.1 Phytozome11 Nature
Linum usitatissimum Flax Lus Eudicot v1.0 Phytozome11 Plant Journal
Malus domestica Apple Mdo Eudicot v1.0 GDR Nature genetics
Manihot esculenta Cassava Mes Eudicot v6.1 Phytozome11 Nature communications
Medicago truncatula Barrel medic Mtr Eudicot Mt4.0v1 Phytozome11 Nature
Micromonas pusilla CCMP1545 Mpu Green algae v3.0 Phytozome11 Science
Micromonas sp. RCC299 Msp Green algae v3.0 Phytozome11 Science
Mimulus guttatus Monkey flower Mgu Eudicot v2.0 Phytozome11 PNAS
Oryza sativa-japonica Rice-japonica Osa Monocot v7.0 Phytozome11 Nature
Ostreococcus lucimarinus Olu Green algae v2.0 Phytozome11 PNAS
Phaseolus vulgaris Common bean Pvu Eudicot v1.0 Phytozome11 Nature genetics
Physcomitrella patens Moss Ppa Moss v3.0 Phytozome10 Science
Populus trichocarpa Poplar Ptr Eudicot v3.0 Phytozome11 Science
Prunus persica Peach Ppe Eudicot v2.1 Phytozome11 Nature genetics
Ricinus communis Castor bean Rco Eudicot v0.1 Phytozome11 Nature biotechnology
Selaginella moellendorffii Spikemoss Smo Lycophytes v1.0 Phytozome11 Science
Setaria italica-Yugu1 Foxtail millet-Yugu1 Sit Monocot v2.2 Phytozome11 Nature biotechnology
Solanum lycopersicum Domesticated tomato Sly Eudicot iTAGv2.3 Phytozome11 Nature
Solanum tuberosum Potato Stu Eudicot v3.4 PGSC Nature
Sorghum bicolor Cereal grass Sbi Monocot v2.1 Phytozome10 Nature
Spirodela polyrhiza Greater Duckweed Spo Basal monocot v2 Phytozome11 Nature communications
Theobroma cacao-Matina Cacao-Matina 1-6 Tca Eudicot v1.1 Phytozome11 Genome Biology
Vitis vinifera Grape Vvi Eudicot Genoscope.12X Phytozome11 Nature
Volvox carteri Volvox Vca Green algae v2.0 Phytozome11 Science
Zea mays Maize Zma Monocot Ensembl-18_2010-01-MaizeSequence Phytozome11 Science
Zostera marina Seagrass-Common Eelgrass Zom Basal monocot v2.2 (ER) Phytozome11 Nature
Phoenix dactylifera Date palm Pda Monocot DPV01 NCBI Nature
Cofea canefora Coffee Cof Eudicot v1.0 CGH Science
Pyrus bretschneideri Chinese pear Pbr Eudicot v1.0 Pear Genome Project Genome research
Pyrus communis European pear Pco Eudicot v1.0 GDR PloS one
Prunus mume Mei/Japanese apricot Pmu Eudicot v1.0 PMDB Nature communications
Actinidia chinensis Kiwifruit Ach Eudicot v1.0 KGD Nature communications
Morus notabilis Mulberry Mno Eudicot v1.0 MorusDB Nature communications
Musa acuminata Banana Mac Monocot v2.0 BGH BMC Genomics
Ziziphus jujuba Jujube Zju Eudicot v1.1 NCBI Nature communications
Jatropha curcas Physic nut Jcu Eudicot v4.5 JGD DNA research
Primula veris Cowslip Pve Eudicot v1.0 Dryad Genome Biology
Dianthus caryophyllus Carnation Dca Eudicot v1.0 CDB DNA research
Phalaenopsis equestris Orchid Peq Monocot v5.0 BGI Nature genetics
Picea abies Norway spruce Pab Gymnosperm v1.0 ConGenIE Nature
Pinus taeda Lobloly pine Pta Gymnosperm v3.0 TreeGenes Genome Biology
Humulus lupulus Hop Hlu Eudicot v1.0 HopBase Plant and Cell Physiology
Brassica rapa Chinese cabbage Bra Eudicot v1.5 BRAD Nature genetics
Brassica oleracea Brassica Bol Eudicot v1.1 BRAD Nature communications
Brassica napus Oilseed rape Bna Eudicot v5.0 Genoscope Science
Cucumis melo Melon Cme Eudicot v3.5.1 MELONOMICS PNAS
Citrullus lanatus Watermelon Cla Eudicot v1.0 ICuGI Nature genetics
Capsicum annuum-CM334 Pepper-CM334 Cac Eudicot v1.55 PGP Nature genetics
Capsicum annuum-Zunla-1 Pepper-Zunla-1 Caz Eudicot v2.0 TPGD PNAS
Capsicum annuum-Wild Wild pepper Caw Eudicot v2.0 TPGD PNAS
Solanum melongena Eggplant Sme Eudicot v2.5.1 EGD DNA research
Raphanus sativus Radish Rsa Eudicot v1.0 RGD Theoretical & Applied Genetics
Beta vulgaris Sugar beet Bvu Eudicot v1.2 MPIMG Nature
Thlaspi arvense Field pennycress Tar Eudicot v1.0 PGG DNA research
Elaeis guineensis Oil palm Egu Monocot v2.0 MyOPGP Nature
Utricularia gibba Humped bladderwort Ugi Eudicot CoGe (Jun 2013) CoGe Nature
Ostreococcus tauri Prasinophyceae Ota Green algae v2.0 ORCAE PNAS
Camelina sativa False flax Cam Eudicot v2.0 BRAD Nature communications
Leavenworthia alabamica Lal Eudicot UCSC (2016) UCSC Nature genetics
Sisymbrium irio Sir Eudicot UCSC (2016) UCSC Nature genetics
Aethionema arabicum Aar Eudicot UCSC (2016) UCSC Nature genetics
Eutrema salsugineum Salt cress Esa Eudicot v1.0 Chinese Academy of Sciences PNAS
Thellungiella parvula Tpa Eudicot v2.0 Dassanayake Lab Website Nature genetics
Gossypium arboreum Cotton A Gar Eudicot v1.0 CottonGen Nature genetics
Gossypium hirsutum Upland cotton Ghi Eudicot v1.1 CottonGen Nature biotechnology
Gossypium barbadense Sea-Island cotton Gba Eudicot v1.0 GBAP Scientific reports
Arabis alpina Gray rockcress Aal Eudicot v4.0 NCBI Nature Plants
Cajanus cajan Pigeonpea Cca Eudicot v5.0 GigaDB Nature biotechnology
Cicer arietinum-Kabuli Kabuli chickpea Cak Eudicot v1.0 GigaDB Nature biotechnology
Cicer arietinum-Desi Desi chickpea Cad Eudicot v2.0 CGAP Scientific reports
Vigna radiata Mungbean Vra Eudicot v6.0 LIS Nature communications
Trifolium pratense Red clover Tpr Eudicot v2 Phytozome11 Scientific reports
Vigna angularis Adzuki bean Van Eudicot v1.0 VIGGS Scientific reports
Lotus japonicus Lotus Lja Eudicot v3.0 LIS DNA research
Arachis duranensis Peanut A Adu Eudicot v1.0 PeanutBase Nature genetics
Arachis ipaensis Peanut B Aip Eudicot v1.0 PeanutBase Nature genetics
Sesamum indicum Sesame Sin Eudicot v1.0 Sinbase Genome biology
Oropetium thomaeum Oth Monocot v1.0 Phytozome11 Nature
Phyllostachys heterocycla Moso bamboo Phe Monocot v1.0 NCGR Nature genetics
Nelumbo nucifera Sacred lotus Nnu Basal Eudicot v1.0 LOTUS-DB Genome Biology
Solanum pennellii Wild tomato Spe Eudicot v2.0 SPGP Nature genetics
Solanum pimpinellifolium Currant tomato Spi Eudicot v1.0 SGN Nature
Hordeum vulgare Barley Hvu Monocot 082214v1 Ensembl Nature
Triticum aestivum Bread wheat Tae Monocot IWGSC1.0+popseq Ensembl Science
Triticum urartu Wheat A Tur Monocot ASM34745v1 Ensembl Nature
Aegilops tauschii Wheat D Ata Monocot v1.0 GigaDB Nature
Oryza barthii Oba Monocot v1.0 Ensembl PNAS
Oryza brachyantha Obr Monocot v1.4b Ensembl Nature communications
Oryza glaberrima Oga Monocot v1.1 Ensembl Nature genetics
Oryza glumaepatula Ogu Monocot ALNU02000000 Ensembl PNAS
Oryza longistaminata Olo Monocot v1.0 Ensembl Molecular Plant
Oryza meridionalis Ome Monocot v1.3 Ensembl PNAS
Oryza nivara Oni Monocot AWHD00000000 Ensembl PNAS
Oryza punctata Opu Monocot AVCL00000000 Ensembl Nature genetics
Oryza rufipogon Oru Monocot OR_W1943 Ensembl Nature genetics
Leersia perrieri Lpe Monocot v1.4 Ensembl current opinion in plant biology
Oryza sativa-indica Rice-indica Osi Monocot v1.27 Ensembl Science
Theobroma cacao-Criollo Cacao-Criollo Tcc Eudicot v1.0 CocoaGenHub Nature genetics
Setaria italica-Zhang gu Foxtail millet-Zhang gu Siz Monocot v2.0 BGI Nature biotechnology
Nicotiana tabacum Tobacco Nta Eudicot SGN (Oct 2015) SGN Nature communications
Rubus occidentalis Black raspberry Roc Eudicot v1.0 GDR Nucleic acids research
Zoysia japonica Zoysiagrasses Zja Monocot v1.1 ZGD DNA research
Juglans regia Walnut Jre Eudicot v1.0 TreeGenes The Plant journal
Glycine soja Wild soybean Gso Eudicot W05v1.0 NCBI Nature communications
Populus euphratica Euphrates poplar/desert poplar Peu Eudicot v1.0 STPD Nature communications
Hevea brasiliensis Para rubber tree Hbr Eudicot v1.0 NCBI Nature Plants
Zizania latifolia Jiaobai Zla Monocot v1.0 Bioinplant Lab The Plant journal
Cynara cardunculus Globe artichoke Ccs Eudicot v1.0 CyMSatDB Scientific reports
Daucus carota Carrot Dac Eudicot v2.0 Phytozome11 Nature genetics
Petunia axillaris Pax Eudicot v1.6.2 SGN Nature Plants
Petunia inflata Pin Eudicot v1.0.1 SGN Nature Plants
Salix suchowensis Willow Ssu Eudicot v4.0 Willow DB Cell research
Corylus avellana European hazelnut Cav Eudicot v1.0 EHGRP Crop Science
Fagopyrum esculentum Buckwheat Fes Eudicot v1.0 BGD DNA research
Salvia miltiorrhiza Danshen Smi Eudicot v1.0 GigaDB GigaScience
Lepidium meyenii Maca Lme Eudicot v1.0 CHPGD Molecular Plant
Dendrobium officinale Dof Monocot v1.0 CHPGD Molecular Plant
Moringa oleifera Drumstick tree Mol Eudicot v1.0 CHPGD Science China Life Sciences
Boea hygrometrica Boea hygrometrica Bhy Eudicot v1.0 NCBI PNAS
Dendrobium catenatum Dec Monocot v1.0 NCBI Scientific reports
Tarenaya hassleriana Spider flower Tha Eudicot v1.0 NCBI The Plant cell
Olea europaea Olive tree Oeu Eudicot v1.0 GigaDB GigaScience
Zostera muelleri Seagrass-southern hemisphere Zmu Basal monocot v1.0 AppliedbioDB Plant Physiology
Chlorella variabilis NC64A Cva Green algae v1.0 JGI The Plant cell
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